Publications

Szu-Chi Chung, Chien-Hong Cho, Strong Wen (2025). The EEPAS Model Revisited: Statistical Formalism and a High-Performance, Reproducible Open-Source Framework. arXiv preprint arXiv:2512.13064.

Pei-Han Chen, Szu-Chi Chung (2025). A Data-Centric Perspective on the Influence of Image Data Quality in Machine Learning Models. arXiv preprint arXiv:2509.24420.

Ching-Feng Chen, Szu-Chi Chung, Wei-Hau Chang, I-Ping Tu (2025). EM-2SDR: unsupervised clustering of 3D conformations directly from 2D cryo-EM images via tensor-structure modeling. Annals of Mathematical Sciences and Applications.

Szu-Chi Chung, Po-Cheng Chou (2025). CRISP: A Framework for Cryo-EM Image Segmentation and Processing with Conditional Random Field. Preprint.

Szu-Chi Chung, Po-Cheng Chou (2024). A Novel Particle Picking Pipeline for Cryo-EM Using Semantic Segmentation and Conditional Random Field. 6th International Conference on Statistics: Theory and Applications.

Teng-Yu Lin, Szu-Chi Chung (2024). CLEAPA: a framework for exploring the conformational landscape of cryo-EM using energy-aware pathfinding algorithm. Bioinformatics.

Szu-Chi Chung (2024). Cryo-forum: A framework for orientation recovery with uncertainty measure with the application in cryo-EM image analysis. Journal of Structural Biology.

Teng-Yu Lin, Szu-Chi Chung (2023). Exploring the Conformational Landscape of Cryo-EM Using Energy-Aware Pathfinding Algorithm. Preprint.

Szu-Chi Chung, Hisn-Hung Lin, Kuen-Phon Wu, Ting-Li Chen, Wei-Hau Chang, I-Ping Tu (2022). RE2DC: a robust and efficient 2D classifier with visualization tool for rapid processing massive and heterogeneous cryo-EM data. Preprint.

I-Ping Tu, Yi-Ching Yao, Szu-Chi Chung, Shao-Hsuan Wang, Tze Leung Lai (2022). Uncertainty quantificafition in dynamic image reconstruction with applications to cryo-EM. Statistica Sinica.

Wei-Hau Chang, Shih-Hsin Huang, Hsin-Hung Lin, Szu-Chi Chung, I-Ping Tu (2021). Cryo-EM Analyses Permit Visualization of Structural Polymorphism of Biological Macromolecules. Frontiers in Bioinformatics.

Szu-Chi Chung, Shao-Hsuan Wang, Cheng-Yu Hung, Wei-Hau Chang, I-Ping Tu (2021). rAMI – Rapid Alignment with Moment of Inertia for Cryo-EM Image Processing. Microscopy and Micro-analysis 2021 Meeting.

Szu-Chi Chung, Hung-Yi Wu, Wei-Hau Chang, I-Ping Tu (2021). Grouping 3D Structure Conformations using Network Analysis on 2D Cryo-EM Projection Images. Focus on Microscopy 2021.

Szu-Chi Chung, Cheng-Yu Hung, Huei-Lun Siao, Hung-Yi Wu, Wei-Hau Chang, I-Ping Tu (2021). Cryo-RALib – a modular library for accelerating alignment in cryo-EM. 2021 IEEE International Conference on Image Processing.

Tze-Leung Lai, Shao-Hsuan Wang, Yi-Ching Yao, Szu-Chi Chung, Wei-Hau Chang, I-Ping Tu (2021). Cryo-EM: Breakthroughs in Chemistry, Structural Biology, and Statistical Underpinnings. Submitted to Statistical Science.

Wei-Hau Chang, I-Kuen Tsai, Hsin-Hung Lin, Shih-Hsin Huang, Szu-Chi Chung, I-Ping Tu, Steve Yu, Sunney I. Chan (2021). Copper Centers in the Cryo-EM Structure of Particulate Methane Monooxygenase Reveal the Catalytic Machinery of Methane Oxidation. Journal of the American Chemical Society.

Szu-Chi Chung, SHAO-HSUAN WANG, Po-Yao Niu, Su-Yun Huang, Wei-Hau Chang, I-Ping Tu (2020). Two-stage dimension reduction for noisy high-dimensional images and application to Cryogenic Electron Microscopy. Annals of Mathematical Sciences and Applications.

Szu-Chi Chung, Hsin-Hung Lin, Po-Yao Niu, Shih-Hsin Huang, Wei-Hau Chang, I-Ping Tu (2020). Pre-Pro is a Fast Pre-Processor for Single-Particle Cryo-EM by Enhancing 2D Classification. Communications Biology.

Chun-Yuan Yu, Sung-Shin Lee, Szu-Chi Chung, Hsi-Chia Chang, Chen-Yi Lee (2019). Encryption/decryption apparatus and power analysis protecting method thereof. US Patent.

Sung-Shin Lee, Szu-Chi Chung, Chun-Yuan Yu, Hsi-Chia Chang, Chen-Yi Lee (2019). Cracking devices and methods thereof. US Patent.

Szu-Chi Chung, Po-Yao Niu, Su-Yun Huang, Wei-Hau Chang, I-Ping Tu (2019). A Two-Stage Dimension Reduction Method for Cryo-EM Image Processing. Microscopy & Microanalysis 2019 Meeting (Post-deadline poster).

Szu-Chi Chung, Chen-Yi Lee (2017). Stream Cipher and ID-Based Crypto Systems for IoT Applications. Thesis.

Szu-Chi Chung, Chun-Yuan Yu, Sung-Shine Lee, Hsie-Chia Chang, Chen-Yi Lee (2017). An improved DPA countermeasure based on uniform distribution random power generator for IoT applications. IEEE Transactions on Circuits and Systems I: Regular Papers.

Sung-Shine Lee, Szu-Chi Chung, Chun-Yuan Yu, Hsie-Chia Chang, Chen-Yi Lee (2015). A New Power AnalysisAttack on Stream cipher Trivium-64. *VLSI Design/CAD Symposium (VLSI-CAD) *.

Szu-Chi Chung, Sung-Shine Lee, Hsie-Chia Chang, Chen-Yi Lee (2014). Implementing Bilinear Pairing Accel-erator Using Residue Number System. VLSI Design/CAD Symposium (VLSI-CAD).

Szu-Chi Chung, Jing-Yu Wu, Hsing-Ping Fu, Jen-Wei Lee, Hsie-Chia Chang, Chen-Yi Lee (2014). Efficient Hardware Architecture of \eta_T Pairing Accelerator Over Characteristic Three. IEEE Transactions on Very Large Scale Integration (VLSI) Systems.

Jen-Wei Lee, Szu-Chi Chung, Hsie-Chia Chang, Chen-Yi Lee (2013). A 3.40 ms/GF (p521) and 2.77 ms/GF (2521) DF-ECC processor with side-channel attack resistance. 2013 60th IEEE International Solid-State Circuits Conference, ISSCC 2013.

Jen-Wei Lee, Szu-Chi Chung, Hsie-Chia Chang, Chen-Yi Lee (2013). Processor with side-channel attack resistance. 2013 IEEE International Solid-State Circuits Conference Digest of Technical Papers.

Jen-Wei Lee, Szu-Chi Chung, Hsie-Chia Chang, Chen-Yi Lee (2013). Efficient power-analysis-resistant dual-field elliptic curve cryptographic processor using heterogeneous dual-processing-element architecture. IEEE Transactions on very large scale integration (vlsi) systems.

Jen-Wei Lee, Szu-Chi Chung, Hsie-Chia Chang, Chen-Yi Lee (2012). An efficient countermeasure against correlation power-analysis attacks with randomized montgomery operations for DF-ECC processor. International Workshop on Cryptographic Hardware and Embedded Systems.

Szu-Chi Chung, Jen-Wei Lee, Hsie-Chia Chang, Chen-Yi Lee (2012). A high-performance elliptic curve cryptographic processor over GF (p) with SPA resistance. 2012 IEEE International Symposium on Circuits and Systems.